We can communicate in many ways, other animals may  message each by vocalising or gesturing.  Some release air-borne chemicals (pheromones) to attract a mate.  Plants also communicate by chemical signals that they release into the environment. The most obvious example is the release of scents to attract pollinators.   These floral scents are usually oils, made from volatile organic compounds (VOCs).  VOCs are carbon based compounds, such as the terpenes. They usually have a strong and pleasant odour.  They form partt of the scent of many plants, for example, honeysuckle, roses, jasmine, lilac, and mock orange.  Different plants produce different scents.  These different chemical signatures help pollinators identify particular species, and locate the nectar on offer. The VOCs produced by ripe fruit help attract animals that assist in seed dispersal. [caption id="attachment_43370" align="aligncenter" width="675"] Buff tailed bumblebee visiting a foxglove[/caption] VOCs are also produced by leaves when plants are under attack.  These may deter the attacking organism directly, e.g. caterpillars, or they may attract an organism that predates upon the herbivore. When pollen beetles feed on oil seed rape, the plants release VOCs which attract the attention of insects (a type of wasp). The wasps lay their eggs in the larvae of the pollen beetles. The pollen beetle larvae are then ‘eaten alive’, by the developing wasp larvae.  Sometimes, VOCs are produced by stressed or attacked plants,  these VOCs ‘warn’ nearby plants of the same species. These plants can then activate their defences before they are attacked. This helps ensure the survival of some of the population. Recently, it has been suggested that mycorrhizal systems act as a physical and chemical ‘means of communication’ between the trees in a woodland, in what has been termed the ‘wood wide web’. The term was coined by Dr. Suzanne Simard, a forest ecologist at the University of British Columbia to describe the complex relationships between fungi and plants in woodland ecosystems.  Interestingly, VOCs can influence air quality and atmospheric processes.  In a woodland,  the scent of pine or other conifers may permeate the air.  Pines release volatile compounds, such as alpha-pinene.  Recent research has established that these volatile compounds / vapours are not only responsible for the characteristic scent, but also contribute to the formation of aerosols in the atmosphere* both in and around such woodlands and forests.  In the presence of sunlight, VOCs can interact with the gas nitric oxide to form ground level ozone, which contributes to smog formation. Forests can be a significant source of VOC emissions. The production of VOCs is affected by environmental  conditions.  VOCs release generally goes up with an increase in temperature, as the plants metabolism increase.  An increase in temperature also helps in the evaporation / volatilisation of plant oils and scents. Water availability and light intensity also affect VOC release.  * An aerosol is a ‘mixture’ of very small particles (solid or liquid) in air; other examples of aerosols include mist, cigarette smoke, or car exhaust fumes Addendum : Heavier and far rarer VOCs are the sesquiterpenes, larger molecules that trees in the Amazon release when exposed to drought.  These reactive molecules help form tiny particles that seed clouds and scatter sunlight. These emissions could change the weather and climate over the whole region.  For full details see : https://www.earth.com/news/amazon-trees-emitted-never-before-seen-chemicals-during-drought/  

When you step into your garden during the Spring or Summer months, you might be aware of the scent of honeysuckle, lavender or indeed an old fashioned rose.  Similarly, in a woodland the scent of pine or other conifers may permeate the air.  These various scents often involve a group of compounds known as the terpenes.  The resin that exudes from pine bark is rich in terpenes. Terpenes are used in the building of many complex organic molecules and contribute to the make-up of volatile, organic compounds [VOCs] - produced by many plants.  The scents released from nectaries or other parts of flowering plants are often associated with attracting pollinating insects, but they can serve other functions.  For example, some VOCs released by a plant may warn surrounding plants of attack by insects. However, as you walk down the street, the air is rarely filled with these pleasant, natural scents. Instead the fumes of traffic, factories and industry assail us.  They are the exhaust emissions from cars, lorries, buses etc, plus the various bits and pieces [particulates] that are released from the ‘rubber’ of car tyres, brake pads etc.  The damaging effects of particulates are now well documented.  The effects include lung disease such as chronic obstructive pulmonary disease (COPD) and reduced lung function.   Particulates help create the concoction of substances that we inhale; sadly our air is often polluted with many different compounds. Scientists from Oxford University and Kew recently investigated air quality in different locations around Oxford.  The locations varied from the centre of the town, where the Botanic Garden is found, out to the University’s Wytham Woods.  Wytham is one of the most intensively studied woodland areas in the world.  The wood ‘holds’ 500 plus plant species and 800 or more butterfly and moth species. Records of bird populations go back some sixty or more years (largely due to the work of David Lack and others).   The air samples that the scientists collected were subjected to detailed chemical analysis using the technique of gas chromatography-mass spectrometry. Some 245 different compounds were identified in the various air samples, with each of the six different sites haveing their own signature collection of chemicals.  Sites near to busy roads contained high levels of benzene and toluene, which are traffic-related chemicals.  The tree rich areas naturally showed a greater presence of plant chemicals (VOCs).  Unsurprisingly, when they sampled the air in the Botanic Garden (over the course of a year), they found the highest levels of these plant compounds.  Warmer weather increased the levels of these VOCs / plant derived chemicals, which have been associated with improved mood and stress reduction. Full details of the Oxford study here : https://nph.onlinelibrary.wiley.com/doi/10.1002/ppp3.70191

The woodlands blog has previously reported on the damage being wreaked by bark beetles.  These beetles may be small (less than a centimetre in length) but their effects on the western forests of North America has been immense. Some areas have lost 90% of their conifers.   Outbreaks of these beetles have been increasing in size and severity.  Indeed, across Europe, the eurasian bark beetle (Its typographus) has killed millions of conifers. Whilst bark is broadly protective, it can also offer a home to certain insects.  Bark beetles lay their eggs just below the bark so that when the larvae hatch, they can feed on the nutrient-rich living tissue of the cambium and phloem. Consequently, the tree's transport systems begin to fail.  The beetles may also introduce disease-causing fungi and bacteria. Ageing stands of trees coupled with warmer winters, which help the overwintering stage of the insect, have contributed to the spread of bark beetles. .  Conifers, by their nature, are not defenceless.  When a pine tree is cut / wounded, it produces a pale yellow and sticky fluid - RESIN to seal the cut or wound [see above image]. This material helps prevent the entry of pests or pathogens, and can stem water loss. The resin may trap insect invaders as  witnessed by those trapped in time capsules of amber.  Resin is rich in terpenes, these are used in the building of many complex organic molecules and contribute to the make-up of the volatile oils, produced by many plants.  Terpenes are made from units of isoprene, which has the formula C5H8. So the basic formula of a terpene is (C5H8)n, where n is the number of isoprene units that have been joined together.  Terpenes are also readily available in coniferous oils, which contribute to the unique smell of a pine forest or a burning log. [caption id="attachment_40973" align="alignleft" width="300"] Old and dying tree[/caption] These ‘chemical defences’ should trap, poison or deter an insect invader, such as the bark beetle.  But it would seem that bark beetles ‘don’t mind’ these defences. Research suggests that the eurasian bark beetle might have an ally.  Certain fungi (from the genus - Grosmannia) are found in association with these beetles. When the  Grosmannia fungi infect spruce trees they alter the chemical profile the trees, so that infected trees produce different volatile chemicals - ie they smell different.  The bark beetles are able to detect these differences and exploit this ‘breach’ of the trees natural defences.  The unique chemical profile of infected trees and the pheromones produced by the beetles probably help explain the swarming behaviour of the bark beetles.  A heavy beetle infestation results in the death of a tree. However, there is a possible positive in this rather sad tale.  At present, traps for bark beetles rely solely on using pheromones but if the pheromones can be combined with the chemicals produced by the fungi then it opens the door to more effective beetle traps.  

Many trees emit a scent or fragrance.  They form volatile organic compounds (VOC’s), often oils.  Pine trees, for example, release pinenes. Such VOC’s contribute to the smell that you may experience as you walk through a woodland.  The VOCs contribute to the formation of aerosols.  An aerosol is a ‘mixture’ of very small particles (solid or liquid) in air; other examples of aerosols include mist, cigarette smoke, or even car exhaust fumes!  Recent research by the University of East Finland has showed that aerosols formed from VOCs can reduce the amount of solar radiation that reaches the earth’ surface, by scattering some of the radiation back into space.  [caption id="attachment_40200" align="aligncenter" width="532"] Felling in progress[/caption] Pine trees are often grown in vast numbers and periodically felled for timber and paper making.  One by-product of paper-making (by the Kraft process) is turpentine - formed by the condensation and collection of the volatile oils in the wood). The pinenes (α and β) are major constituents of turpentine.  ‘Turps’ is used as a solvent to thin oil-based paints, for producing varnishes and as a ‘raw material’ in the chemical industry.  α-Pinene was used to make toxaphene (an insecticide, now banned).  Pinene can also treated with acetic acid to make a perfume with a pine needle smell. Recently a team of scientists at the University of Bath have found a new use for the by-products of paper production.  Using pinene from turpentine, they have been able to make a number of pharmaceutical compounds that can then be made into the painkillers - paracetamol and ibuprofen.  They have also successfully made other chemicals from the plant based turpentine, including compounds that may be used to synthesise `beta-blockers (heart tablets) and salbutamol (used for asthma).   At present, many pharmaceuticals and other chemicals are ultimately derived from crude oil.  Hopefully, this research will ultimately lead to a more sustainable and ‘green’ approach to drug / pharmaceutical manufacture. Biochar is the black residue, consisting of carbon and ashes that remain when plant biomass is subject to pyrolysis - that is, very high temperatures with very little  or no oxygen present oxygen. The material that remains is largely elemental carbon.  The benefits of converting plant biomass into biochar is that the carbon is ‘locked up’, rather than being released by decay and decomposition into the atmosphere as carbon dioxide.  Its advocates claim that when added to soil, it improves soil structure and function, as well as being a form of carbon sequestration.. [caption id="attachment_40215" align="alignleft" width="300"] cocoa fruit[/caption] Various forms of biomass (woody debris, corn stalks) have been used to produce biochar, however, a novel method makes use of ‘discarded’ cocoa bean shells.  These are heated to a temperature in excess of 600oC, with no oxygen present.  This particular form of biochar is being produced in in Hamburg. The plant, which is one of the largest in Europe, receives a supply of used cocoa shells viably a network of grey pipes from a neighbouring chocolate factory.  Apart from its use as a fertiliser, it is possible that it might be used as an ingredient to create a ‘green’ (or more environmentally friendly) form of concrete. The sequestration of carbon is vital if we are to avoid the worst effects of climate change.  Global warming has triggered an increase in heatwaves, floods, droughts, and forest fires in recent years; June temperature data confirms it was the planet's hottest on record. Cocoa fruit : courtesy of Pixabay.

Across the world there may be three trillion trees. A mature tree may have 200,000 leaves, so there are a lot of leaves in the world - not counting those on herbaceous plants, grasses and shrubs.  The broad structure of a leaf is outlined here in woodlands.co.uk Tree ID. The leaf is the site of photosynthesis, providing food for the tree, and oxygen for us.  As the leaf is rich in nutrients, it is a source of nutrition for many organisms - other than the tree.  Oak trees are said to support over 2000 species, ranging from mammals, birds, beetles, spiders, fungi - through leaf-based food chains.  Leaves also support many micro-organisms through the detrital food chain (the decomposition of leaves in the litter layer and the soil). We do not eat many tree leaves, though some do make their way into our diet.  For example, the evergreen shrub Camellia sinensis is widely grown in many parts of the world for the production of tea.  The young leaves can be picked in spring and dried to make tea.  Leaves of other plants are used in various herbal infusions or for flavouring such as bay, sage, oregano, thyme etc. The fact that leaves are attractive to so many herbivores means that trees (and other plants) take measures to protect themselves. Some measures are physical - such as spines, thorns, prickles etc.   But when is a thorn a thorn, rather than a spine or a prickle?  These terms are used casually and interchangeably.  Botanically speaking, they are all ‘spinose structures’ that is hard, rigid extensions or modifications of leaves, roots, or stems - all of which have sharp, stiff ends and all have the same role - to deter animals from eating the plant that bears them.  Plants that bear sharp structures that deter herbivory are termed spinescent.  There are differences between these various ‘structures’. thorns are derived from shoots (they may be branched or not, may or may not have leaves). The thorns of Hawthorn (Crataegus monogyna) can bear leaves. spines are derived from leaves (they may be formed from all of the leaf or just part of it and like thorns they have vascular tissue*) prickles are derived from the epidermis (the outer layer of cells of a stem, root or a leaf).   Prickles may be found almost anywhere on a plant and they do not have vascular tissue inside.  Wild lemon and lime trees (Genus: Citrus) have spines, which protect young plants and indeed the fruits. The defences on roses are often described as thorns, but they are prickles, as they do not have vascular tissue (xylem and phloem) inside them. Sometimes, the leaf epidermis forms smaller, ‘simpler’ physical barriers called trichomes.  These are outgrowths of epidermal tissue but generally consist of only a few cells which form a defence against small insects.  Equally, a thick,  waxy cuticle on a leaf may be something of a deterrent to smaller insects. Leaves sometimes form ‘teeth’ on the leaf margins and leaf apices.  A classic example of this is seen in Holly.  Holly leaves that develop at ground level are wavy, with large triangular ‘teeth’, bearing spines.   As the tree grows and holly can reach up to 80 feet,  the leaves become less spiny. The spines offer protection against grazing animals at the lower levels but are no longer needed when the trees reach a certain height. While physical defences such as spines, prickles and trichomes can deter various herbivores,  chemical defences may also be deployed.  Chemical defences can take different ‘forms’, such as  [caption id="attachment_28705" align="alignright" width="300"] Oozing latex - Euphorbia[/caption] tannins and phenolics. These create an bitter taste, they are complex polyphenols built from several phenolic molecules. Tannins are common in leaf tissues - particularly in the cells on the top surface of a leaf.  Scale leaves of buds are often particularly rich in tannins, reducing  the palatability or "tastiness" of the tissue thereby offering protection from herbivores.  Alkaloids are again usually bitter tasting compounds -, many of them derived from amino acids. Glycosides, as the name suggests, contain a sugar that is joined to another chemical, such as cyanide (as seen in bitter almonds (amygdalin). Another possibility is that leaves may emit chemicals (aka VOC’ volatile organic compounds, scents, aromas) that deter insect visitors, or if a leaf is under attack by a insect pest then a leaf may release a VOC to ‘warn’ nearby plants of the attack so that they produce chemicals that make the leaves distasteful. How long a leaf lives is incredibly variable, it may be eaten within days of its formation, it may last till autumn or it may last for years.  Many trees of temperate climes are deciduous, that is they shed their leaves come the shorter days of autumn.  The advantage of this is that the tree offers less resistance to the winds of winter, so is less likely to suffer physical damage (also true of snowfall).  The tree enters a state of dormancy until spring.  If in spring the tree produces flowers before the leaves (like Blackthorn) this  can facilitate wind dispersal of the pollen.  However, losing leaves each year means that their nutrients are either lost or have to be moved out and stored somewhere else.  Having longer lasting leaves means that nutrients are retained, which is a distinct advantage in a nutrient poor, harsh environment.  The longest lived leaves are found in a plant of the Namib Desert : Welwitschia.  This plant has two leaves throughout its life of some two thousand years.  The leaves may reach a length of 4 metres, the ends die or get worn away but the base generates new tissue.   Welwitschia is a type of Gymnosperm. Image (with thanks) by Nhelia from Pixabay  

Electric bees ? Both bumblebees and flowers carry an electric charge.  Flowers have a weak negative charge, whilst the bees have a positive charge.  The attraction between these two opposing electric fields may help the bees sense flowers.  The electric charge of a bee may even stimulate a flower to release a burst of scent, aka volatile organic compounds.  This was true for petunias, but not snapdragons.  When a bee has visited a flower, the negative charge is briefly lost - maybe a signal to tell other bbees not to visit? Other work by Bristol University has indicated that synthetic fertilisers and pesticide can interfere with a flower’s electric charge for some time after spraying, and that this can modify the foraging of bumblebees. "Black bees" The black bee, Apis mellifera mellifera, faces a number of threats like the domestic honey bee.  It is also known as the European Dark Bee or the Black German Bee. It has been present since the retreat of the last Ice Age, but its distribution has become restricted as a result of habitat loss, parasitism by Varroa mites and viruses. The black bee can be distinguished from other honey bees by its stocky body and sparse abdominal hair (which is brown), and overall dark coloration - so they appear black or dark brown. Recent research (using DNA analysis) has shown that black honeybees can be found in many locations in Ireland and are not extinct, as previously suggested  Black bees are noted for their longevity and hardiness (ability to cope with winter temperatures); it is possible that if winters become shorter / milder that this change may not favour black bees. Weird weeds? It seems that our gardens may be home to ‘new’ or unusual species of plants.   The Royal Horticultural Society would like gardeners to report on interesting ‘weeds’ that might find as they could be rare plants or plants growing in unusual places / areas.  You are asked to take photographs of anything that you find interesting, and upload the images to iNaturalist. Reporting on unusual plants is not the only thing that the RHS is interested in. There are other garden projects that one can contribute to, for example, reporting sightings of garden pests such as the berberis sawfly, cellar slug, hemerocallis gall midge, lily beetle, rosemary beetle and spittlebug. Mycorrhizal networks. A common mycorrhizal network (CMN) is when fungal hyphae connect the roots of many plants (either of the same or different species) below ground.  They have attracted considerable attention in recent times (woodland wide webs), with claims, for example, that resources are transferred through CMNs to increase seedling performance and mature trees send resources / defence signals to offspring etc.  However, a recent report in Nature has suggested that there is a ‘bias’ towards citing the positive effects of CMNs and that, to date, knowledge of common mycorrhizal networks is limited.    

Moss puts a brake on peak flow and flooding. “Moors for the future” have been working in the Peak District to investigate the run off of water after rain.  Often after a storm, rain water will run off a hillside unimpeded so that communities downstream in valleys are vulnerable to flooding.  Moors for a future have been planting upland areas (on Kinder Scout) with Sphagnum moss.  They have planted some 50,000 plants of the moss.  Prior to the planting of the moss, the surface might be bare, and rainwater would run straight off.  It was found that the moss dramatically slowed the run off of water, and the volume of water discharged from the hillside, preventing rivers from becoming inundated.  Each moss plant can hold up to twenty times its own weight of water.  The sphagnum moss also protects the underlying peat, so that new layers of material can accumulate - allowing for carbon sequestration. Help from vegetables ? More and more bacteria are now resistant to many types of antibiotics, consequently it is increasingly difficult to treat certain types of bacterial infection / disease.  In some cases, this is due to the production of a biofilm.  Bacteria grow on many surfaces within our bodies and as they grow and multiply they may encase themselves in a matrix of extra-cellular material that they produce ( as seen in Pseudomonas sp). Research workers at the Ben Gurion University have found that certain compounds from cruciferous vegetables, such as broccoli, can break down these bacterial films. Cruciferous vegetables include Cabbages, Cauliflower, Brussels sprouts, Kale, Radish, Kohlrabi and Mustard. The chemical DIM (3,3 diindolylmethane) was able to disrupt the biofilm.  When introduced to an infected, wound, it was found to speed up the healing process. It is hoped that further work will lead to a commercially viable product for the treatment of certain infections. (Thanks to Ulleo on Pixabay for adjacent image). ‘Help Signals’ from oil seed rape. Oilseed rape (or rapeseed, Brassica napus) is a major crop in many parts of the country.  It provides an oil and is also contributes to animal feedstuffs and biofuels.  Great swathes of the country turn yellow when the plant is in flower during the summer months.  These monocultures are ideal for the animals that feed on the plants, these range from insects, to nematodes, slugs and wood pigeons   One particular pest of oil seed rape is the Common Pollen Beetle (Brassicogethes aeneus).  The female beetles lay eggs in the flower buds of and the larvae develop within the flowers.  Both adults and larvae feed on the pollen and nectar in the flowers. Plants have limited means of fighting attackers.  They may construct structural defences, as discussed in the woodlands blog, or they may use chemical defences.  When bitten by a marauding herbivore some plants emit volatile organic compounds (VOC’s).  As the pollen beetles feed, the rapeseed releases VOCs which attract the attention of other insect - notably those that will lay their eggs into the larvae of the pollen beetles. These insects are usually from the same family as bees, wasps and ants - the Hymenoptera (insects with membranous wings and a ‘narrow waist’.   The pollen beetle larvae are then ‘eaten’ from the inside by the developing parasitoid larva.  This effectively constitutes a form of biological control.  Interestingly, the pollen beetles preferred to lay eggs into rapeseed plants plants growing with high levels of N fertilisation, whereas their parasitoids favoured more moderate levels of N fertilization.  This work was undertaken  at the Estonian University of Life Sciences. Finding the flowers. Research at the University of Exeter has shown that bees can distinguish between various flowers through a combination of colour and pattern.  This selectivity is achieved despite the ‘acuity’ of a bee’s vision being quite low (about a 100 times lower than ours) - this means they can only see the pattern of a flower when they are quite close ( a matter of centimetres).  The researchers analysed a large amount of data on plants and visiting bee behaviour, and experiments involving artificial shapes and colours.  One particular finding was the importance of the contrast between the outside of the flower and the plant’s foliage.  This seemed to help bees quickly find their way to the flowers.

Migrating hoverflies. Hoverflies are important pollinators, plus they also act as important predators  of crop pests such as Aphids.  Some hoverflies (like the pied and yellow clubbed hoverflies) spend the summer in the U.K. but then fly to the Mediterranean or North Africa come the autumn. They begin these migrations on sunny days but simply flying towards the sun would take them on a rather long winded  route.  A study by a research team at Exeter University suggests that they are able to account for the sun’s movement using their circadian rhythm - an internal clock.   If the circadian rhythm of the hoverfly is disrupted, then so is its flight path. Migrating cuckoos. Like many other birds, cuckoos are in decline.  Some time back, the BTO set up a research unit to learn more about the  decline and behaviour of cuckoos.  The work of this group has revealed details of the cuckoos’ migration routes and its winter homelands. Cuckoos have two routes out of the UK : They migrate out south west via Spain and Morocco - the WEST route, or  They take a south east route via Italy and the Balkans (the EAST route) but Both routes ultimately converge on the Congo Basin in Central Africa. However, the birds that take the WEST route leave some eight days later than those taken the EAST route, but were more likely to die en route. Most of the mortality of the birds occurs in the European section of the migration path.  This may be a reflection of the status of their stop-over sites.  Problems might include : Habitat change, droughts and wildfires Decline in food sources (e.g. large moth caterpillars). A lot more detail / information on this project can be found here. VOC’s The air around us is a mixture of different gases / particles / and aerosols.  An aerosol is itself a ‘mixture’ of very small particles (solid or liquid) in air.  These particles can come from a variety of sources :such as volcanoes, cars, trucks and wood fires. Examples of aerosols include  mist,  cigarette smoke,  fires volcanoes car exhaust fumes.   Some trees and plants also release volatile organic compounds (VOCs), for example  Pine trees release alpha-pinene.  Recent research has established that these volatile compounds / vapours are not only responsible for the characteristic scent, but are also important in the formation of aerosols found in the air in and around such woodlands and forests.   Atmospheric aerosols scatter and absorb light, and also influence the formation of clouds, though these processes are not fully understood.  Recent research by the University of East Finland has showed that biogenic aerosols (formed from VOCs) can reduce the amount of solar radiation that reaches the earth’ surface.  They help scatter the radiation back into space.  These biogenic aerosols increase the number of cloud droplets and make the clouds more reflective.